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여러 열 집합 수집

optionbox 2020. 8. 25. 07:55
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여러 열 집합 수집


응답자가 질문을 1-3 번 반복하는 온라인 설문 조사의 데이터가 있습니다. 설문 조사 소프트웨어 (퀼트 릭스가) 여러 열 - 인이 데이터를 기록, 조사에 Q3.2은 열이있을 것이다 Q3.2.1., Q3.2.2.그리고 Q3.2.3.:

df <- data.frame(
  id = 1:10,
  time = as.Date('2009-01-01') + 0:9,
  Q3.2.1. = rnorm(10, 0, 1),
  Q3.2.2. = rnorm(10, 0, 1),
  Q3.2.3. = rnorm(10, 0, 1),
  Q3.3.1. = rnorm(10, 0, 1),
  Q3.3.2. = rnorm(10, 0, 1),
  Q3.3.3. = rnorm(10, 0, 1)
)

# Sample data

   id       time    Q3.2.1.     Q3.2.2.    Q3.2.3.     Q3.3.1.    Q3.3.2.     Q3.3.3.
1   1 2009-01-01 -0.2059165 -0.29177677 -0.7107192  1.52718069 -0.4484351 -1.21550600
2   2 2009-01-02 -0.1981136 -1.19813815  1.1750200 -0.40380049 -1.8376094  1.03588482
3   3 2009-01-03  0.3514795 -0.27425539  1.1171712 -1.02641801 -2.0646661 -0.35353058
...

모든 QN.N * 열을 깔끔한 개별 QN.N 열로 결합하여 궁극적으로 다음과 같은 결과를 얻고 싶습니다.

   id       time loop_number        Q3.2        Q3.3
1   1 2009-01-01           1 -0.20591649  1.52718069
2   2 2009-01-02           1 -0.19811357 -0.40380049
3   3 2009-01-03           1  0.35147949 -1.02641801
...
11  1 2009-01-01           2 -0.29177677  -0.4484351
12  2 2009-01-02           2 -1.19813815  -1.8376094
13  3 2009-01-03           2 -0.27425539  -2.0646661
...
21  1 2009-01-01           3 -0.71071921 -1.21550600
22  2 2009-01-02           3  1.17501999  1.03588482
23  3 2009-01-03           3  1.11717121 -0.35353058
...

tidyr라이브러리는이 gather()결합하는 좋은 작품 기능, 하나의 열 세트를 :

library(dplyr)
library(tidyr)
library(stringr)

df %>% gather(loop_number, Q3.2, starts_with("Q3.2")) %>% 
  mutate(loop_number = str_sub(loop_number,-2,-2)) %>%
  select(id, time, loop_number, Q3.2)


   id       time loop_number        Q3.2
1   1 2009-01-01           1 -0.20591649
2   2 2009-01-02           1 -0.19811357
3   3 2009-01-03           1  0.35147949
...
29  9 2009-01-09           3 -0.58581232
30 10 2009-01-10           3 -2.33393981

The resultant data frame has 30 rows, as expected (10 individuals, 3 loops each). However, gathering a second set of columns does not work correctly—it successfully makes the two combined columns Q3.2 and Q3.3, but ends up with 90 rows instead of 30 (all combinations of 10 individuals, 3 loops of Q3.2, and 3 loops of Q3.3; the combinations will increase substantially for each group of columns in the actual data):

df %>% gather(loop_number, Q3.2, starts_with("Q3.2")) %>% 
  gather(loop_number, Q3.3, starts_with("Q3.3")) %>%
  mutate(loop_number = str_sub(loop_number,-2,-2))


   id       time loop_number        Q3.2        Q3.3
1   1 2009-01-01           1 -0.20591649  1.52718069
2   2 2009-01-02           1 -0.19811357 -0.40380049
3   3 2009-01-03           1  0.35147949 -1.02641801
...
89  9 2009-01-09           3 -0.58581232 -0.13187024
90 10 2009-01-10           3 -2.33393981 -0.48502131

Is there a way to use multiple calls to gather() like this, combining small subsets of columns like this while maintaining the correct number of rows?


This approach seems pretty natural to me:

df %>%
  gather(key, value, -id, -time) %>%
  extract(key, c("question", "loop_number"), "(Q.\\..)\\.(.)") %>%
  spread(question, value)

First gather all question columns, use extract() to separate into question and loop_number, then spread() question back into the columns.

#>    id       time loop_number         Q3.2        Q3.3
#> 1   1 2009-01-01           1  0.142259203 -0.35842736
#> 2   1 2009-01-01           2  0.061034802  0.79354061
#> 3   1 2009-01-01           3 -0.525686204 -0.67456611
#> 4   2 2009-01-02           1 -1.044461185 -1.19662936
#> 5   2 2009-01-02           2  0.393808163  0.42384717

This could be done using reshape. It is possible with dplyr though.

  colnames(df) <- gsub("\\.(.{2})$", "_\\1", colnames(df))
  colnames(df)[2] <- "Date"
  res <- reshape(df, idvar=c("id", "Date"), varying=3:8, direction="long", sep="_")
  row.names(res) <- 1:nrow(res)

   head(res)
  #  id       Date time       Q3.2       Q3.3
  #1  1 2009-01-01    1  1.3709584  0.4554501
  #2  2 2009-01-02    1 -0.5646982  0.7048373
  #3  3 2009-01-03    1  0.3631284  1.0351035
  #4  4 2009-01-04    1  0.6328626 -0.6089264
  #5  5 2009-01-05    1  0.4042683  0.5049551
  #6  6 2009-01-06    1 -0.1061245 -1.7170087

Or using dplyr

  library(tidyr)
  library(dplyr)
  colnames(df) <- gsub("\\.(.{2})$", "_\\1", colnames(df))

  df %>%
     gather(loop_number, "Q3", starts_with("Q3")) %>% 
     separate(loop_number,c("L1", "L2"), sep="_") %>% 
     spread(L1, Q3) %>%
     select(-L2) %>%
     head()
  #  id       time       Q3.2       Q3.3
  #1  1 2009-01-01  1.3709584  0.4554501
  #2  1 2009-01-01  1.3048697  0.2059986
  #3  1 2009-01-01 -0.3066386  0.3219253
  #4  2 2009-01-02 -0.5646982  0.7048373
  #5  2 2009-01-02  2.2866454 -0.3610573
  #6  2 2009-01-02 -1.7813084 -0.7838389

Update

With tidyr_0.8.3.9000, we can use pivot_longer to reshape multiple columns. (Using the changed column names from gsub above)

library(dplyr)
library(tidyr)
df %>% 
    pivot_longer(cols = starts_with("Q3"), 
          names_to = c(".value", "Q3"), names_sep = "_") %>% 
    select(-Q3)
# A tibble: 30 x 4
#      id time         Q3.2    Q3.3
#   <int> <date>      <dbl>   <dbl>
# 1     1 2009-01-01  0.974  1.47  
# 2     1 2009-01-01 -0.849 -0.513 
# 3     1 2009-01-01  0.894  0.0442
# 4     2 2009-01-02  2.04  -0.553 
# 5     2 2009-01-02  0.694  0.0972
# 6     2 2009-01-02 -1.11   1.85  
# 7     3 2009-01-03  0.413  0.733 
# 8     3 2009-01-03 -0.896 -0.271 
#9     3 2009-01-03  0.509 -0.0512
#10     4 2009-01-04  1.81   0.668 
# … with 20 more rows

NOTE: Values are different because there was no set seed in creating the input dataset


With the recent update to melt.data.table, we can now melt multiple columns. With that, we can do:

require(data.table) ## 1.9.5
melt(setDT(df), id=1:2, measure=patterns("^Q3.2", "^Q3.3"), 
     value.name=c("Q3.2", "Q3.3"), variable.name="loop_number")
 #    id       time loop_number         Q3.2        Q3.3
 # 1:  1 2009-01-01           1 -0.433978480  0.41227209
 # 2:  2 2009-01-02           1 -0.567995351  0.30701144
 # 3:  3 2009-01-03           1 -0.092041353 -0.96024077
 # 4:  4 2009-01-04           1  1.137433487  0.60603396
 # 5:  5 2009-01-05           1 -1.071498263 -0.01655584
 # 6:  6 2009-01-06           1 -0.048376809  0.55889996
 # 7:  7 2009-01-07           1 -0.007312176  0.69872938

You can get the development version from here.


It's not at all related to "tidyr" and "dplyr", but here's another option to consider: merged.stack from my "splitstackshape" package, V1.4.0 and above.

library(splitstackshape)
merged.stack(df, id.vars = c("id", "time"), 
             var.stubs = c("Q3.2.", "Q3.3."),
             sep = "var.stubs")
#     id       time .time_1       Q3.2.       Q3.3.
#  1:  1 2009-01-01      1. -0.62645381  1.35867955
#  2:  1 2009-01-01      2.  1.51178117 -0.16452360
#  3:  1 2009-01-01      3.  0.91897737  0.39810588
#  4:  2 2009-01-02      1.  0.18364332 -0.10278773
#  5:  2 2009-01-02      2.  0.38984324 -0.25336168
#  6:  2 2009-01-02      3.  0.78213630 -0.61202639
#  7:  3 2009-01-03      1. -0.83562861  0.38767161
# <<:::SNIP:::>>
# 24:  8 2009-01-08      3. -1.47075238 -1.04413463
# 25:  9 2009-01-09      1.  0.57578135  1.10002537
# 26:  9 2009-01-09      2.  0.82122120 -0.11234621
# 27:  9 2009-01-09      3. -0.47815006  0.56971963
# 28: 10 2009-01-10      1. -0.30538839  0.76317575
# 29: 10 2009-01-10      2.  0.59390132  0.88110773
# 30: 10 2009-01-10      3.  0.41794156 -0.13505460
#     id       time .time_1       Q3.2.       Q3.3.

In case you are like me, and cannot work out how to use "regular expression with capturing groups" for extract, the following code replicates the extract(...) line in Hadleys' answer:

df %>% 
    gather(question_number, value, starts_with("Q3.")) %>%
    mutate(loop_number = str_sub(question_number,-2,-2), question_number = str_sub(question_number,1,4)) %>%
    select(id, time, loop_number, question_number, value) %>% 
    spread(key = question_number, value = value)

The problem here is that the initial gather forms a key column that is actually a combination of two keys. I chose to use mutate in my original solution in the comments to split this column into two columns with equivalent info, a loop_number column and a question_number column. spread can then be used to transform the long form data, which are key value pairs (question_number, value) to wide form data.

참고URL : https://stackoverflow.com/questions/25925556/gather-multiple-sets-of-columns

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